Oberseminar Computational Genomics
Module IN2122
Lecturer Julien Gagneur
Room Seminar room 01.09.034
Time Wednesdays, 9:00 - 10:30
Timetable
| Wed, Oct 4 | Johannes Hingerl | Evolutionary-scale DNA language models |
| Wed, Oct 18 | Ines Scheller | A Fast and Harmonized Framework for Outlier Detection in Omics Data |
| Wed, Oct 25 | Alexander Karollus | Species-aware DNA language models capture regulatory elements and their evolution |
| Wed, Nov 8 | Pedro Tomaz da Silva | Solving the transcriptome code by sequencing 500 million years of fungi evolution |
| Wed, Nov 15 | Laura Martens | Benchmarking methods for cell type deconvolution of spatial accessibility data & Plans for single-cell downstream tasks for the species-aware DNA language models |
| Thu, Nov 23 | Christian Mertes | NCBench: providing a continuouse benchmarking approach |
| Thu, Nov 30 | Eva Holtkamp | Integration of variant annotations using deep set networks boosts rare variant association genetics |
| Wed, Dec 6 | Shubhankar Londhe | Improving rare variants association studies using functional gene embeddings |
| Wed, Dec 13 | Yanik Bruns | De novo identification of co-eluting peptides in chimeric mass spectra |
| Wed, Dec 20 | Xavier Hernandez Alias | Regulation of mRNA translation by protein-metabolite interactions |
| Wed, Jan 10 | Nils Wagner | Improving tissue-specific splicing predictions |
| Wed, Jan 17 | Vicente Yépez | RNA-seq based rare diseases diagnostics at the Pan-European consortium Solve-RD |
| Wed, Jan 24 | Florian Hölzlwimmer | Multi-tissue prediction of aberrant gene expression |
| Wed, Feb 7 | Daniela Klaproth-Andrade | De novo sequencing with deep learning |
| Thu, Feb 22 | Alexander Karollus | Cross-species prediction of single base-pair resolution CAGE profiles using DNA language models |
| Wed, Feb 28 | Johannes Hingerl | First forays into gene-aware Species LMs |
| Wed, Mar 6 | Pedro Tomaz da Silva | Long-range nucleotide and cis-regulatory code interactions are revealed by DNA Language models |
| Wed, Mar 27 | Shubhankar Londhe | Functional gene embedding improves rare variant polygenic risk scores |